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Introduction to Bayesian methods and OpenBUGS

Colección

In this block we introduce Bayesian methods, first, by giving the definitions of its main elements, and second, by means of some simple but illustrative examples. The concept of prior and posterior distributions are introduced and the formula to obtain the posterior, in terms of the prior and the sample likelihood is given. Prior and posterior predictive distributions are also defined and obtained. Some graphical examples are used to illustrate the new and deep concepts. The Doodle tool, to build the Bayesian network defining the models and their parameters is described in detail and some examples are given. Finally, an initial view of OpenBUGS is given using the BPR traffic model, which is converted from deterministic to random.

Autores Enrique Castillo
Fecha 17/09/2019 Idioma Ingles

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Contenido

OpenBUGS Bayesian Methods

The OpenBUGs course is introduced with a motivation based on its capabilities to convert deterministic models into random models and to analyze already random models from a Bayesian point of view. We also introduce what Bayesian methods are, including prior, posterior and predictive distributions..

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The Doodle tool in OpenBUGS

We describe how to build the acyclic graph of the Bayesian network that describes the existing dependencies among the variables and the parameters of the model. From this graph we can generate automatically the commands to be given to OpenBUGS. A complete and detailed example is given to illustrate all the steps of the model construction process.

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An initial view of OpenBUGS

A simple example is described, in which all necessary steps to run OpenBUGS are explained in detail. Before trying to use the software, it is very convenient to take a look to this lesson. The BPR function is used as an illustrative example.

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How to use OpenBUGS

This video explains, step by step, how to use OpenBUGS using an example. A detailed explanation is given of how to provide OpenBUGS the model commands, the data and the initial files. The video ends with an explanation of how to analyze the results and get some plots of the main results.

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Calling OpenBUGS from matlab

This video shows how to call OpenBUGS from matlsab. We use the BPR model example and describe in detail how to write the commands, the data and the initial files from matlab and how to call OpenGUBS and JAGS from matlab. Finally, we indicate how to recover the simulated data from OpenBUGS and how to plot some interesting plots, such as the history plots of the simulated parameter values and the corresponding densities.

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Material Adicional
Referencias